天然产物研究与开发 ›› 2022, Vol. 34 ›› Issue (8): 1400-1414.doi: 10.16333/j.1001-6880.2022.8.015

• 数据研究 • 上一篇    下一篇

UPLC-QE-Orbitrap-MS/MS结合网络药理学和实验验证探讨西洋参治疗动脉粥样硬化的作用机制

何   林1,彭   伟1,张学建2,陶飞燕2*,吴纯洁1*   

  1. 1成都中医药大学药学院,成都 611137;2四川中烟工业有限责任公司,成都 610066
  • 出版日期:2022-08-28 发布日期:2022-09-08
  • 基金资助:
    “杏林学者”学科人才科研提升计划(NO.CXTD2018007)

Exploration of the potential mechanism of Panacis Quinquefolii Radix on treating atherosclerosis based on network pharmacology,molecular docking and experimental verification in vitro

HE Lin1,PENG Wei1,ZHANG Xue-jian2,TAO Fei-yan2*,WU Chun-jie1*   

  1. 1School of Pharmacy,Chengdu University of Traditional Chinese Medicine,Chengdu 611137,China;2China Tobacco Sichuan Industrial Co.,Ltd.,Chengdu 610066,China
  • Online:2022-08-28 Published:2022-09-08

摘要:

本文旨在运用网络药理学和分子对接探讨冷冻干燥西洋参(freeze-drying Panacis Quinquefolii Radix,FDPQ)治疗动脉粥样硬化(atherosclerosis,AS)的潜在作用机制。首先通过UPLC-Q Exactive Orbitrap-MS/MS分析得到FDPQ的皂苷类成分,利用SwissTargetPrediction平台预测其潜在靶点,从GeneCards数据库获取AS的相关靶点,取交集获得候选靶点。其次利用Cytoscape软件筛选出枢纽基因,构建蛋白互作网络(PPI)。通过Metascape平台对枢纽基因进行基因本体论富集(GO)和京都基因与基因组百科全书通路分析(KEGG)。然后构建药物-成分-靶点-疾病-通路网络获得治疗疾病的活性成分和靶点,并应用Discovery Studio软件对二者的亲和力进行预测。最后采用H2O2诱导PC12细胞建立氧化损伤细胞模型,FDPQ干预后,CCK-8法检测细胞活力、检测线粒体膜电位、测定抗氧化酶活性、qRT-PCR检测相关基因的mRNA表达,初步验证网络药理学的预测结果。最终从FDPQ中鉴定出人参皂苷Rg4、拟人参皂苷F11等28种皂苷类化合物,得到PIK3CA、VEGFA等21个FDPQ治疗AS的核心靶点。GO和KEGG分析显示主要的生物过程及信号通路有:跨膜受体蛋白酪氨酸激酶信号通路、黏着斑、蛋白质丝氨酸/苏氨酸/酪氨酸激酶活性、PI3K-Akt信号通路、脂质和动脉粥样硬化相关通路、VEGF信号通路等。分子对接结果表明主要活性成分和靶点的结合力较好,其中,20(R)-人参皂苷Rh1和靶点VEGFA、拟人参皂苷F11和靶点PIK3CA有较高的亲和力。细胞实验表明,与空白组比较,模型组细胞活力降低(P< 0.05),线粒体膜电位降低,SOD、CAT活性降低(P < 0.05),MDA水平升高(P < 0.05),PI3K/Akt表达下调;与模型组比较,FDPQ干预组的细胞活力升高(P < 0.05),线粒体膜电位升高,SOD、CAT活性升高(P < 0.05),MDA水平降低(P< 0.05),PI3K/Akt表达上调。本研究初步提示了FDPQ治疗AS多成分、多靶点、多途径的作用特点,为进一步阐释其物质基础和作用机制奠定了一定的基础。

关键词: 冷冻干燥西洋参, 动脉粥样硬化, 网络药理学, 作用机制

Abstract:

This study aims to explore the potential action mechanism of freeze-drying Panacis Quinquefolii Radix (FDPQ) on atherosclerosis (AS) based on network pharmacology and molecular docking.Firstly,the saponins of FDPQ were characterized by UPLC-Q Exactive Orbitrap-MS/MS analysis.Then,the related targets of FDPQ and AS were predicted using the SwissTargetPrediction database and GeneCards database,respectively.The overlapping targets of FDPQ and AS were obtained and subjected to GO and KEGG analysis.Further,the PPI and drug-compounds-targets-disease-pathways networks were constructed by Cytoscape software.Discovery studio software was employed to predict the docking affinity between the potential targets for AS treatments and active components from FDPQ.Finally,PC12 cells were induced by H2O2 to establish an oxidative damage cell model and treated with FDPQ.CCK-8 method,mitochondrial membrane potential detection,antioxidant enzyme activity determination,and qRT-PCR detection of related gene mRNA expression were used to preclinically verify the prediction results of network pharmacology.According to the results of UPLC-Q Exactive Orbitrap-MS/MS analysis,28 ginsenosides of FDPQ were identified,such as ginsenosides Rg4 and pseudo-ginsenoside F11.A total of 21 core targets including PIK3CA and VEGFA were obtained through PPI network analysis.The most significantly enriched pathway of GO and KEGG involved transmembrane receptor protein tyrosine kinase signaling pathway,focal adhesion,protein serine/threonine/tyrosine kinase activity,PI3K-Akt signaling pathway,Lipid and atherosclerosis,VEGF signaling pathway,et al.The results of molecular docking show that the main active components have a good binding affinity with the key targets.For example,pseudo-ginsenoside F11 had a high affinity with the target PIK3CA.Cell experiments showed that compared with blank group,cell viability of model group decreased (P< 0.05),mitochondrial membrane potential decreased and MDA level increased (P< 0.05),SOD and CAT activities decreased (P< 0.05),PI3K/Akt expression was down-regulated;Compared with model group,FDPQ group increased cell viability (P< 0.05),mitochondrial membrane potential increased and MDA level decreased (P< 0.05),SOD and CAT activities increased (P< 0.05),PI3K/Akt expression was up-regulated.This network pharmacology-based research indicates that FDPQ’s effect on AS is characterized by multi-ingredients,multi-targets,and multi-pathways,laying a preliminary foundation for further study of its material basis and mechanism of action.

Key words: freeze-drying Panacis Quinquefolii Radix, atherosclerosis, network pharmacology, mechanism of action

中图分类号:  R285