天然产物研究与开发 ›› 2023, Vol. 35 ›› Issue (11): 1964-1976.doi: 10.16333/j.1001-6880.2023.11.015

• 数据研究 • 上一篇    下一篇

基于网络药理学和实验验证探讨二氢杨梅素改善db/db小鼠肾纤维化的作用机制

刘醒然1,3,牛梦竹1,高原1,寇现娟1,2*   

  1. 1武汉体育学院运动医学院;2武汉体育学院运动训练监控湖北省重点实验室,武汉 430079;3广西医科大学体育与健康学院,南宁 530021
  • 出版日期:2023-11-28 发布日期:2023-11-26
  • 基金资助:
    国家自然科学基金(81601228);教育部人文社会科学基金(21YJA890014)

Mechanism of dihydromyricetin in improving renal fibrosis in db/db mice based on network pharmacology and experimental validation

LIU Xing-ran1,3,NIU Meng-zhu1,GAO Yuan1,KOU Xian-juan1,2*   

  1. 1School of Sports Medicine,Wuhan Sports University;2Hubei Exercise Training and Monitoring Key Laboratory,Wuhan Sports University,Wuhan 430079,China;3School of Physical Education and Health,Guangxi Medical University,Nanning 530021,China
  • Online:2023-11-28 Published:2023-11-26

摘要:

本研究利用网络药理学、分子对接技术以及动物实验研究探讨二氢杨梅素(dihydromyricetin,DHM)改善2型糖尿病db/db小鼠肾纤维化的作用机制。首先观察10周的DHM干预对db/db小鼠肾纤维化的改善作用。进一步通过TCMSP、PharmMapper获取DHM化学结构以及靶点,通过DisGeNET数据库检索疾病靶点;将DHM靶点与疾病靶点进行Venn分析,获得交集靶点后上传至String数据库构建PPI网络,采用Cytoscape软件构建“药物—靶点—疾病”网络; David数据库对交集靶点基因进行GO富集分析和KEGG富集分析。同时取PPI网络排名前10的交集靶点进行可视化处理,采用PDB数据库、Pymol软件以及AutoDock Tools软件将排名前5的交集靶点分别与DHM进行分子对接;对排名第一的核心靶点AKT及相关通路进行Western blot验证。动物实验观察可见DHM干预可以降低db/db小鼠体重,改善db/db小鼠血糖、肌酐、尿素氮、尿蛋白水平, HE、Masson和PAS染色结果显示db/db小鼠肾脏纤维化得到缓解。此外,网络药理学筛选共获得药物与疾病靶点交集37个,富集分析得到300个GO相关条目,108条相关通路;分子对接结果表明DHM与关键靶点均能自发结合。 Western blot结果显示DHM干预可以降低db/db小鼠肾脏中的Notch1、NICD、Hes1、Hey1的蛋白表达,上调PTEN蛋白表达,抑制AKT的磷酸化,进而改善db/db小鼠肾纤维化。因此,DHM可能通过调控Notch/PTEN/AKT通路改善db/db小鼠肾纤维化。

关键词: 糖尿病肾病, 肾纤维化, 二氢杨梅素, 网络药理学, 分子对接

Abstract:

Network pharmacology,molecular docking and animal experimental studies were used to investigate the mechanism of dihydromyricetin (DHM) in improving renal fibrosis in type 2 diabetic db/db mice.Initially,a 10-week DHM intervention was observed to ameliorate renal fibrosis in db/db mice.The chemical structure and targets of DHM were further obtained by TCMSP and PharmMapper,and the disease targets were retrieved by DisGeNET database.Venn analysis was performed on DHM targets and disease targets,and the intersection targets were uploaded to the String database to construct the PPI network.The ′drug-target-disease′ network was constructed by Cytoscape software.The GO enrichment analysis and KEGG enrichment analysis of the intersection target genes were performed by the David database.At the same time,the top 10 intersection targets of PPI network were visualized,and the top 5 intersection targets were subjected to molecular docking with DHM using PDB database,Pymol software and AutoDock Tools software.The first core target AKT and related signaling pathways were verified by Western blot.Animal experiments showed that DHM intervention could reduce the body weight of db/db mice and improve the levels of blood glucose,creatinine,urea nitrogen and urine protein in db/db mice.HE,Masson and PAS staining showed that renal fibrosis of db/db mice was alleviated.In addition,a total of 37 intersections of drugs and disease targets were obtained by network pharmacology,300 GO-related items and 108 related pathways were obtained by enrichment analysis.Molecular docking results showed that DHM could spontaneously bind to key targets.Western blot analysis results showed that DHM intervention could reduce the protein expression of Notch1,NICD,Hes1 and Hey1 in the kidney of db/db mice,up-regulate the level of PTEN protein,inhibit the phosphorylation of AKT,thus improve renal fibrosis.Taken together,DHM may alleviate renal fibrosis in db/db mice by regulating Notch/PTEN/AKT pathway.

Key words: diabetic kidney disease, renal fibrosis, dihydromyricetin, network pharmacology, molecular docking

中图分类号:  R96