天然产物研究与开发 ›› 2023, Vol. 35 ›› Issue (增刊2): 136-138.

• 数据研究 • 上一篇    下一篇

维生素D与慢性肾脏病相互作用的网络药理学研究

孙  娟,陈洁文*,张海峰,刘希鹏   

  1. 上海交通大学医学院附属第九人民医院临床营养科,上海200011
  • 出版日期:2023-12-28 发布日期:2023-12-12

The interaction between vitamin D and chronic kidney disease based on network pharmacology

SUN Juan,CHEN Jie-wen*,ZHANG Hai-feng,LIU Xi-peng   

  1. Department of Clinical Nutrition,Shanghai Ninth People′s Hospital Affiliated to Shanghai Jiaotong University School of Medicine,Shanghai 200011,China
  • Online:2023-12-28 Published:2023-12-12

摘要:

通过网络药理学探讨维生素D(vitamin D,Vit D)与慢性肾脏病(CKD)的相关性,并探索对Vit D与CKD共同作用靶点产生影响的核心蛋白。通过DrugBank西药数据库检索Vit D的相关靶点,得到Vit D的药物靶点共2个;通过DisGeNET数据库检索CKD疾病相关靶点,得到CKD疾病靶点共1 074个;利用Venny 平台对成分靶点和疾病靶点取交集,得到Vit D药物靶点及CKD疾病共有靶点1个(VDR);将共有靶点导入STRING构建蛋白-蛋白相互作用(PPI)网络,对药物-疾病共有靶点做蛋白-蛋白互作网络图,并筛选出蛋白与蛋白之间互相作用的核心蛋白。得到影响VDR作用的主要蛋白有GC、CYP27B1、EP300、NCOA3、CTNNB1、MED1、SMAD3、RXRA、BAZ1B、NCOA1。基于网络药理学结果发现,Vit D可能通过作用于VDR靶点在CKD的防治中起作用。GC、CYP27B1、EP300、NCOA3、CTNNB1、MED1、SMAD3、RXRA、BAZ1B、NCOA1蛋白可以与VDR相互作用,从而影响Vit D与CKD共同作用靶点的核心蛋白。

关键词: 维生素D, 慢性肾脏病, 作用机制, 网络药理学

Abstract:

To explore the interaction between vitamin D(Vit D) and chronic kidney disease (CKD)based on network pharmacology,and to explore the core proteins that affect the common targets of vitamin D and CKD.Two targets of Vit D were obtained through the DrugBank database.A total of 1 074 targets of CKD disease were obtained through DisGeNET database.The intersection of Vit D targets and the targets of CKD was obtained by the Venny platform. A common target of Vit D and CKD was obtained,which was VDR.The common targets were imported into the String database to construct the protein-protein interaction (PPI) network,and the core proteins of protein-protein interaction were screened.PPI network analysis showed that ten proteins were the main proteins affecting the action of VDR,which were GC,CYP27B1,EP300,NCOA3,CTNNB1,MED1, SMAD3,RXRA,BAZ1B,NCOA1.Based on the results of network pharmacology,Vit D may play a role in the prevention or treatment of CKD by acting on the VDR targets.GC,CYP27B1,EP300,NCOA3,CTNNB1,MED1,SMAD3,RXRA,BAZ1B and NCOA1 could interact with VDR,and affect the core protein of the common target of Vit D and CKD.

Key words: vitamin D, chronic kidney disease, mechanism, network pharmacology

中图分类号:  R151