天然产物研究与开发 ›› 2025, Vol. 37 ›› Issue (1): 143-155.doi: 10.16333/j.1001-6880.2025.1.016 cstr: 32307.14.1001-6880.2025.1.016

• 数据研究 • 上一篇    下一篇

基于网络药理学和实验验证研究黄芪-党参药对干预动脉粥样硬化的作用机制

陈晶晶1,贺   粤2*,张文风1,黄   超2   

  1. 1长春中医药大学,长春 130117;2深圳市宝安区人民医院,深圳 518000
  • 出版日期:2025-01-22 发布日期:2025-01-22
  • 基金资助:
    国家自然科学基金(81903985);深圳市宝安区医疗卫生科研项目(2023JD256);长春中医药大学“杏林学者工程-青年科学家项目”培养计划(QNKXJ2-2021ZR20)

Intervention mechanism of Astragali Radix-Codonopsis Radix on atherosclerosis based on network pharmacology and experimental verification

CHEN Jing-jing1,HE Yue2*,ZHANG Wen-feng1,HUANG Chao2   

  1. 1Changchun University of Traditional Chinese Medicine,Changchun 130117,China;2Shenzhen Bao′an District People′s Hospital,Shenzhen 518000,China
  • Online:2025-01-22 Published:2025-01-22

摘要:

基于网络药理学、分子对接及实验验证探究中药药对黄芪-党参(Astragali Radix-Codonopsis Radix,AR-CR)治疗动脉粥样硬化(atherosclerosis,AS)的分子作用机制。首先通过检索TCMSP、PubChem、SwissTargetPrediction、UniProt、GeneCards等数据库,获取中药药对AR-CR的活性成分,预测该药对的作用靶点,筛选动脉粥样硬化的相关靶点基因,然后利用Venny平台、STRING数据库、Cytoscape(Version 3.8.2)软件进行拓扑分析获取AR-CR治疗动脉粥样硬化的关键靶点,使用DAVID数据库对所获得的关键靶点进行GO和KEGG富集分析,并借助Auto Dock tools、Auto Dock cina对核心蛋白与活性成分完成分子对接,最后,利用氧化型低密度脂蛋白(oxidized low density lipoprotein,ox-LDL)诱导人脐静脉内皮细胞,建立AS细胞模型进行体外生物学验证。AR-CR共检索到34个活性化合物,并预测潜在化合物靶点426个,通过与875个AS靶点进行交际映射,获得AR-CR治疗AS关键靶点69个,筛选出3,9-二邻甲基苯胺、7-甲氧基-2-甲基异黄酮、5α-豆甾烷-3,6-二酮、木犀草素4个主要活性化合物,丝氨酸/苏氨酸蛋白激酶(serine/threonine-protein kinase,AKT1)、肿瘤蛋白p53(tumor protein p53,TP53)、丝裂原激活蛋白激酶3 (mitogen-activated protein kinase 3,MAPK3)等25个核心靶点。KEGG通路富集分析得到关键通路为糖基化终末产物(advanced glycation end-product,AGE)/糖基化终末产物受体(receptor for advanced glycation endproduct,RAGE)信号通路和脂质与动脉粥样硬化信号通路等。分子对接结果显示4个主要活性化合物与核心靶点蛋白均能连接,其中与TP53的结合活性最强。体外实验结果表明低、中、高剂量的AR-CR能够促进动脉粥样硬化模型细胞增殖,抑制其凋亡,并促进TP53 mRNA及TP53蛋白表达。综上,该研究初步揭示AR-CR治疗AS的作用机制,与网络药理学及分子对接预测的TP53因子相关,通过调控TP53因子促进AS模型细胞增殖,抑制其凋亡,为临床治疗AS提供了理论基础。

关键词: 黄芪-党参, 动脉粥样硬化, 网络药理学, 分子对接, TP53, 实验验证

Abstract:

This study aims to explore the molecular mechanism of Astragali Radix-Codonopsis Radix (AR-CR) herb pair in the treatment of atherosclerosis (AS) based on network pharmacology,molecular docking and experimental verification.Firstly,the active substances of AR-CR herb pair were obtained,the target of the pair was predicted,and the target genes related to atherosclerosis were screened,by searching for TCMSP,PubChem,SwissTargetPrediction,UniProt,GeneCards and other databases.Then,the Venny platform,STRING database and Cytoscape (Version 3.8.2) software were used for topology analysis to obtain the key targets of AR-CR herb pair in the treatment of AS.The DAVID database was used to perform GO and KEGG enrichment analysis on the obtained key targets,and the molecular docking of core proteins and active substances was completed with Auto Dock tools and Auto Dock cina.Finally,oxidized low-density lipoprotein (ox-LDL) was used to induce human umbilical vein endothelial cells,and an atherosclerotic cell model was established for in vitro biological verification.Thirty-four active compounds were obtained from AR-CR in total,and 426 potential compound targets were predicted.By communicating with 875 AS targets,69 key targets for the treatment of AS were obtained,and four active compounds,including 3,9-di-O-methylnissolin,7-methoxy-2-methyl isoflavone,5α-stigmastan-3,6-dione and luteolin and serine/threonine-protein kinase (AKT1),tumor protein p53 (TP53),Mitogen-activated protein kinase 3 (MAPK3) and other 25 core targets were screened out.KEGG pathway enrichment analysis showed that the key pathways were advanced glycation end products (AGE) / receptor of advanced glycation end products (RAGE) signaling pathway and lipid-atherosclerosis signaling pathway.The results of molecular docking indicated that the four main active compounds could be connected with the core target proteins,and the bond activity of TP53 was stronger.The results of the in vitro experiment made clear that low,medium and high dose of AR-CR could enhance the proliferation of atherosclerotic model cells,inhibited their apoptosis,and boosted the expression of TP53 mRNA and TP53 protein.In summary,this study preliminarily reveals that the mechanism of AR-CR in the treatment of AS was related to TP53 factor predicted by network pharmacology and molecular docking.Via modulation of TP53 factor,AR-CR can promote the proliferation of AS model cells and inhibit their apoptosis,which provides a theoretical basis for clinical treatment of AS.

Key words:

中图分类号:  R259